Publications

Up to know (October 2018) 60 publications cited the first version of the MPA and 10 studies listed below used the first MPA software in order to answer their research question:

 

[1] Meta-proteomics of rumen microbiota indicates niche compartmentalisation and functional dominance in a limited number of metabolic pathways between abundant bacteria; E. H. Hart, C. J. Creevey, T. Hitch, A. H. Kingston-Smith; Scientific Reports 2018 8 (1)

[2] SDS-PAGE fractionation to increase metaproteomic insight into the taxonomic and functional composition of microbial communities for biogas plant samples; Lisa Wenzel, Robert Heyer, Kay Schallert, Lucy Löser, Röbbe Wünschiers, Udo Reichl, Dirk Benndorf; Engineering in Life Sciences 2018 18 (7), 498-509

[3]  MPA Portable: A Stand-Alone Software Package for Analyzing Metaproteome Samples on the Go; Thilo Muth, Fabian Kohrs, Robert Heyer, Dirk Benndorf, Erdmann Rapp, Udo Reichl, Lennart Martens, and Bernhard Y. Renard; Analytical Chemistry 2018 90 (1), 685-689

[4] Proteotyping of laboratory-scale biogas plants reveals multiple steady-states in community composition; F. Kohrs, R. Heyer, T. Bissinger, R. Kottler, K. Schallert, S. Püttker, A. Behne, E. Rapp, D. Benndorf, U. Reichl; Anaerobe 2017 46, 56-68

[5] Proteotyping of biogas plant microbiomes separates biogas plants according to process temperature and reactor type; R. Heyer, D. Benndorf, F. Kohrs, J. De Vrieze, N. Boon, M. Hoffmann, E. Rapp, Andreas Schlüter, Alexander Sczyrba, U. Reichl; Biotechnology for Biofuels 2016 9 (1)

[6] The impact of sequence database choice on metaproteomic results in gut microbiota studies; Alessandro Tanca, Antonio Palomba, Cristina Fraumene, Daniela Pagnozzi, Valeria Manghina, Massimo Deligios, Thilo Muth, Erdmann Rapp, Lennart Martens, Maria Filippa Addis, Sergio Uzzau; Microbiome 2016 4 (1)

[7] Colonic metaproteomic signatures of active bacteria and the host in obesity; Carolin A. Kolmeder, Jarmo Ritari, Froukje J. Verdam, Thilo Muth, Salla Keskitalo, Markku Varjosalo, Susana Fuentes, Jan Willem Greve, Wim A. Buurman, Udo Reichl, Erdmann Rapp, Lennart Martens, Airi Palva, Anne Salonen, Sander S. Rensen, Willem M. de Vos; PROTEOMICS 2015 15 (20), 3544-3552

[8] Community shifts in a well-operating agricultural biogas plant: how process variations are handled by the microbiome; Susanne Theuerl, Fabian Kohrs, Dirk Benndorf, Irena Maus, Daniel Wibberg, Andreas Schlüter, Robert Kausmann, Monika Heiermann, Erdmann Rapp, Udo Reichl, Alfred Pühler, Michael Klocke; Applied Microbiology and Biotechnology 2015 99 (18), 7791-7803

[9] Fractionation of biogas plant sludge material improves metaproteomic characterization to investigate metabolic activity of microbial communities; Fabian Kohrs, Sophie Wolter, Dirk Benndorf, Robert Heyer, Marcus Hoffmann, Erdmann Rapp, Andreas Bremges, Alexander Sczyrba, Andreas Schlüter, Udo Reichl; PROTEOMICS 2015 ,Volume15, Issue20, 3585-3589

[10] Metaproteomics of activated sludge from a wastewater treatment plant – A pilot study; Sebastian Püttker, Fabian Kohrs, Dirk Benndorf, Robert Heyer, Erdmann Rapp, Udo Reichl; PROTEOMICS 2015 ,Volume15, Issue20, 3596-3601